Marine Biological Laboratory Workshop on Molecular Evolution  
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Ecklund, A. 1997. The major histocompatibility complex and mating preferences in wild house mice. Behav. Ecol. 8:630-634.

Eddy, S. R. Hidden Markov models. Current Opinion in Structural Biology 6:361-365.

Eddy, S. R. 1998. Profile hidden Markov models. Bioinformatics 14:755-763.

Edgar, R. C. and S. Batzoglou. 2006. Multiple sequence alignment. Current Opinion in Structural Biology 16:368-373.

Edwards, A. W. F. and L. L. Cavalli-Sforza. 1964. Reconstruction of evolutionary trees. pp. 67-76 in Phenetic and Phylogenetic Classification, ed. V. H. Heywood and J. McNeill. Systematics Association Publication No. 6. Systematics Association, London.

Edwards, S. 1997. Relevance of microevolutionary processes to higher level molecular systematics. Pp. 251-278 in Avian Molecular Systematics and Evolution (D. P. Mindell, ed.) Academic Press, New York.

Edwards, S. and P. Beerli. 2000. Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54: 1839-1854.

Edwards, S. and M. Dillon. 2004. Hitchhiking and recombination in birds: evidence from Mhc-linked and unlinked loci in red-winged blackbirds (Agelaius phoeniceus). Genetical Research 84:175-192.

Edwards, S. V., B. Fertil, A. Giron, and P. J. Deschavanne. 2002. A genomic schism in birds revealed by phylogenetic analysis of DNA strings. Syst. Biol. 51:599-613.

Efron, B. 1979. Bootstrap methods: another look at the jackknife. Ann. Stat. 7:1-26.

Efron, B. 1985. Bootstrap confidence intervals for a class of parametric problems. Biometrika 72:45-58.

Eickbush, T. H. 1994. Origin and evolutionary relationships of retroelements. In Evolutionary Biology of Viruses (ed. S.S Morse), pp. 121-157. Raven press.

Eickbush, T. H. 1997. Telomerase and retrotransposons: which came first? Science 277:911-912.

Eickbush, T. H. 1999. Exon shuffling in retrospect. Science 283:1465-1467.

Eisen, J. A. 1998. A phylogenomic study of the MutS family of proteins. Nucleic Acids Res. 26:4291-4300.

Eisen, J. A. 1998. Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Research 8:163-167.

Eisen, J. A. 2000a. Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. Curr. Opinion Genetics Dev. 10:606-612.

Eisen, J. A. 2000b. Assessing evolutionary relationships among microbes from whole genome analysis. Curr. Opin. Microbiol. 3:475-480.

Eisen, J. A. 2002. Brouhaha over the other yeast. Nature 415:845-848.

Eisen, J. A. and Fraser, C.M. 2003. Phylogenomics: Intersection of Evolution and Genomics. Science. 300:1706-1707.

Eisen, J. A. and P.C. Hanawalt. 1999. A phylogenomic study of DNA repair genes, proteins, and processes. Mutat. Res. 435:171-213.

Eisen, J. A., J.F. Heidelberg, O. White, and S.L. Salzberg 2000. Evidence for Symmetric Chromosomal Inversions around the Replication Origin in Bacteria. Genome Biology 1:1-9.

Eisen, J. A., K. E. Nelson, I. T. Paulsen, J. F. Heidelberg, M. Wu, R. J. Dodson, R. DeBoy, M. L. Gwinn, W. C. Nelson, D. H. Haft, E. K. Hickey, J. D. Peterson, A. S. Durkin, J. L. Kolonay, F. Yang, I. Holt, L. A. Umayam, T. Mason, M. Brenner, T. P. Shea, D. Parksey, W. C. Nierman, T. V. Feldblyum, C. L. Hansen, M. B. Craven, D. Radune, J. Vamatheva, H. Khouri, O. White, J. C. Venter, T. M. Gruber, K. A. Ketchum, H. Tettelin, D. A. Bryant, C. M. Fraser. 2002. The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proc. Natl. Acad. Sci. USA 99:9509-9514.

Eisen, J. A., K. S. Sweder, and P.C. Hanawalt. 1996. Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions. Nucleic Acids Res. 23:2715-2723.

Eisen, J. A. and Wu, M. 2002. Phylogenetic Analysis and Gene Functional Predictions: Phylogenomics in Action. Theoretical Population Biology. 61:481-487.

Eisen, J. A. and Fraser, C. M. 2003. Phylogenomics: Intersection of Evolution and Genomics. Science. 300:1706-1707.

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Endo, T., K. Ikeo, and T. Gojobori. 1996. Large-scale search for genes on which positive selection may operate. Molecular Biology and Evolution 13: 685-690.

Eshel I, Feldman MW. 1970. On the evolutionary effect of recombination. Theor Popul Biol. 1(1):88-100.

Ewens WJ. 1972. The sampling theory of selectively neutral alleles. Theor Popul Biol. 3(1):87-112.

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