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Rambaut, A. and L. Bromham. 1998. Estimating divergence dates from molecular sequences. Mol. Biol. Evol. 15:442-448.

Rand, D. 2001. Mitochondrial genomics flies high. Trends Ecol. Evol. 16:2-4.

Rand, D. 2001. The Units of Selection on Mitochondrial DNA. Annu. Rev. Ecol. Syst. 32:415-48

Rand, D. M., R. A. Haney and A. J. Fry. 2004. Cytonuclear coevolution: the genomics of cooperation. Trends Ecol. Evol. 19:645-53

Rand, D. M. and L. M. Kann. 1996. Excess amino acid polymorphism in mitochondrial DNA: Contrasts among genes from Drosophila, mice, and humans. Mol. Biol. Evol. 13:735-748.

Rand, D. M. and L. M. Kann. 1998. Mutation and selection at silent and replacement sites in the evolution of animal mitochondrial DNA. Genetica 102/103:393-407.

Rand, D. M., P. S. Spaeth, T. B. Sackton and P. S. Schmidt. 2002. Ecological Genetics of Mpi and Gpi Polymorphisms in the Acorn Barnacle and the Spatial Scale of Neutral and Non-neutral Variation. Integ. and Comp. Biol. 42:825-836.

Rand, D. M. and D. M. Weinreich. 2000. Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes. Genetics 156:385-399.

Rand, D. M., D. M. Weinreich and B. O. Cezairliyan. 2000. Neutrality tests of conservative-radical amino acid changes in nuclear-and mitochondrially-encoded proteins. Gene 291:115-125.

Rannala, B. and Z. Yang. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43:304-311.

Rannala, B. and Z. Yang. 2003. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164:1645-1656.

Raxworthy, C.J., M.R.J. Forter and R.A. Nassbaum. 2002. Chameleon radiation by oceanic dispersal. Nature. 415:784-787.

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Redelings, B. D. and M. A. Suchard. 2005. Joint Bayesian estimation of alignment and phylogeny. Syst. Biol. 54:401-418.

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Ronquist, F. 2004. Bayesian inference of character evolution. Trends in Ecology and Evolution 19:475-481.

Ronquist, F. and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.

Rost, B. and C. Sander. 1993. Prediction of Protein Secondary Structure at Better than 70% Accuracy. J. Mol. Biol. 232:584-599.

Rost, B. and C. Sander. 1994. Combining Evolutionary Information and Neural Networks to Predict Protein Secondary Structure. Proteins 19:55-77.

Roth, D. B. and N. L. Craig. 1998. VDJ recombination: a transposase goes to work. Cell 94:411-414.

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